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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttcttttgtaatgcaattttgatacaacttgtttttcttataataattatatgatatggtttgcacaaataaatgtgctatctacactctgaagc...

Basic information

species Glycine max
transcript GLYMA01G42140.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g25580.2 (Oryza sativa), 5'ss of exon 9
TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttct-tttgtaatgcaattttgatacaacttgtttttcttataataattatatgat-atggtttgcacaaataaatgtgctatctacactctgaagc
 | | |  | || || || |  || ||  | ||||  || |||||||| |||||||||||||| || |||||||| ||||| || || ||||| |||||| ||| | |||    ||      | | | || |   |  | ||  | || ||   |  | | |  |||      |     || |||   ||   ||  | 
AACTGGGGGAGAGATATCCAATAGAGATTTGCAAAAAATGGTTCAAGCTCTTCCACAGTACAGCGATCAAATTGAGAAGCTTTCTCTTCATGTTGAGgttggttatattttctttgtttagcttaaaaaattccctactttttcactattttccttctcaagaattgtttgtctgctcatgttattc-caaaatggtg-

upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g18030.3 (Oryza sativa), 5'ss of exon 15
TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttcttttgtaatgcaattttgatacaacttgtttttcttataataattatatgatatggtttgcacaaataaatgtgctatctacactctgaagc--
 | | |  | ||  | || || |  ||  | ||||  || |||||||| ||||| ||||||||||| |||||||| |||||  | || ||||| |||||||||  ||   |        ||     |   |   | | |  || || | |     |||||   |  || |||   ||     ||| || | |       
AAATGGTGGAGATTTATCAACCAAAGAGTTGCAAAAAATGGTTCAAGCTCTTCCGCAGTACAGTGATCAAATTGACAAGCTTGCGCTTCATGTTGAGgttagtagttacattccctgccttgtccgcctgtcaatatgca-atgatcactgc-caatatgtgatctaccaatgcctgcttattcttcattttagtttgg

upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G052880_T01 (Zea mays), 5'ss of exon 13
TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttct------tttgtaatgcaattttgatacaacttgtttttcttataataattatatgatatggtttgcacaaataaatgtgc-tatctacactctgaagc
 |      | ||| | || ||||| ||  ||||||  || ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| |||||| ||| |      ||||  | | | |||  || ||  |||||  |  | || |  ||  |  | || | |   | |   |||  ||    |  |     |||   
AACCGATGGAGAATTATCGACAAGAGATTTACAAAAAATGGTTCAGGCTCTTCCACAGTACAGTGATCAAATTGATAAGCTTTCCCTGCATGTTGAGgttggttttatattgtttgcgacgaactttaaattca--ttgttgcttgtctagtg-ttgcactacattgctcata-agtcaaacatggacttgaatggattga---

upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 13
TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttcttttgtaatgcaattttgatacaacttgtttttcttataataattatatgatatggtttgcacaaataaatgtgctatctacactctgaagc--
   | |   |||  | |||||||| ||  | || |  || ||||||||| | ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||  |  |  | ||||| |         | || || ||      |   |    |     ||     | |     |   |  ||| || | ||    
AGATGGAGCTGAGCTTTCTACAAGAGATTTGCAGAAGATGGTTCAAGCATTGCCACAGTACAGTGAACAAATTGACAAGCTCTCTCTCCACGTAGAGgt-agttccatacttgtacaattctctccttttcttttcttgttgcgtccacc-tccacttcaacttttggtagtgctactcacaattactctattaatatg

upper sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 13
TAGTAGCAGTGAAATGTCTACAAGGGACATACAAACCATCGTTCAAGCACTTCCACAGTACAGTGAACAAATTGATAAGCTCTCCCTCCATGTAGAGgttagttcttttgtaatgcaattttgatacaacttgtttttcttataataattatatgata-tggtttgcacaaataaatgtgctat-ctacactctgaagc
  || |  ||||| |||||||||||||| | ||||  || ||||||||  | ||||| || ||||| |||||||| ||||| ||||||||||| ||||||||||  ||| |  |   | |   ||   | ||       | |   |  | | |   |  | ||||  |    |  |  ||  || | ||| | ||    
AGGTGGTGGTGAATTGTCTACAAGGGACTTGCAAAAGATGGTTCAAGCTTTGCCACAATATAGTGAGCAAATTGAGAAGCTTTCCCTCCATGTTGAGgttagtttctttttttttttactagcatcgtattttccaaattaaatgtgttgaaacagttctagtttcaatcgtttgacttggcatgccacattttggt--