1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagttaaaaatgttatacaatcattttgttaatcattatttaattcagtctttactaagtccttccacagatgttaacaggatttaatgtg...
species | Glycine max |
transcript | GLYMA01G41600.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAG GTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGEST: gi|105635049|gb|DW247750.1|DW247750
genomic: ATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaa ... tccgatgtagGTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
EST: ATGTTCCCGCCTGCACGTATGAAGGAGACGATATTGTGCTTCTTTTACAG GTGGCAAGGTATGTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGEST: gi|58018391|gb|CX705133.1|CX705133
genomic: ATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaa ... tccgatgtagGTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
EST: GTATGAAGGAGACAATATTGTGCTTCTTTTACA- GTGGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAA
genomic: GTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaa ... tccgatgtagGT-GGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagttaaaaatgttatacaatcattttgttaatcattatttaattcagtctttactaagtccttccacagatgttaacaggatttaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcca