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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGgtgagaaaagacaaattaaagcctttacatgttagatgcaatggaaatgtttgatgccgatgtgttgttactttattatcatgcag

Basic information

species Glycine max
transcript GLYMA01G37100.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 8
AGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGgtgagaaaag-acaaattaaagcctttacatgttagatgcaatggaaatgtttgatgccgatgtgttgttactttattatcatgcag
|||||||||||| ||||  ||||| ||| |||||||||||||  ||  ||||||||| |||||||| || || || || || || |||||||| || ||||| |     |     |   || | |  | || ||   | || |  |  |   | |||  | ||  || || | |  | |        
AGAAGGAGGAGAAGCATCTGAGATCCCTGTTGATATATCTGTATTGTCCAACATGCGTCAGTTTGTCAAGTACAGCCGTTTTAAGCAATTTGCTCTGAGGgtaaattttgtgtgcaactaatcttacatatcttttct-cactatatgttcctaatgatgttggtttctttcatgctcag-------

upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGgtgagaaaagacaaattaaagcctttacatgttagatgcaatggaaatgtttgatgccgatgtgttgttactttattatcatgcag---
||||||||| ||||| | |||| |||| || || |||||||| || ||||| ||||| |||||||||||||  || ||  |||| ||  ||||||| ||||| | | |  |  |  ||     |||  || | |  | | ||  |  | ||   |     | |     |   || || |  |   |   
AGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAAGCAGATTGCACTTAGGgtaatagagaaagagatag----tttgtatttca--tacgattaagtttttcagtatttttcttaacctgagttgttgtgtttttggag

upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGgtga--gaaaagacaaattaaagcctttacatgttagatgcaatggaaatgtttgatgccgatgtgttgttactttattatcatgcag
|||||||||||| ||||  |||||||| || || |||||||| |||||||||||||| ||||||||||||| ||| ||  | || ||||| ||  ||||||| |   | |||| | |||   |  || |  ||         |||    |||||       ||| ||| |  |||| |  ||  |   
AGAAGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACAACATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCAATTCGCTTTAAGGgtaatcaagaagagagatttgtgt-ttcatttgagtttcttgatgtgtttgtttttattaaatgagttat-gctttttggtctag---