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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtctttctatggaaaagcgtatattgggatttgaaaggaatttttttcaaaattgcagcacaagccattgttggagtctttggcctacgttaacct...

Basic information

species Glycine max
transcript GLYMA01G36990.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36990.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 9
CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtctttctatggaaaagcgtatattgggatttgaaaggaattttttt----caa--aattgcagcacaagccattgttggagtctttggcctacgttaacct--------
||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||||  || | |  |   | ||   ||| |||   |   | ||| ||||| ||    | |  ||||||   | | | ||  |  |   | ||     ||   |    |        
CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGgtgggtttgttaacttacaatt-tatgttgat-tacaagaggcattttcttgcctccactaattgcccaatatgtcag-gcagagatgttgattgtataattgtttcttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305113|gb|CD390316.1|CD390316
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|14990975|gb|BI316648.1|BI316648
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|151396744|gb|EV266617.1|EV266617
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGGCGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|10847418|gb|BF070105.1|BF070105
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|16997110|gb|BM086482.1|BM086482
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|192294443|gb|FG987372.1|FG987372
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACA-GCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
EST: gi|13789154|gb|BG651745.1|BG651745
EST:     ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG                         CCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA
genomic: ATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgttagtcttt ... gtttatccagCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA