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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGCAAAAACGACAGAATAAGTCTGGCAATGGATGTTGGTGCAGgttttctccttatctctctgcagctttcatatagacctatttgagtaatcttttttctactttacattgaaaaatccttaaaacttggaatgcccaaaatgtcttgtag

Basic information

species Glycine max
transcript GLYMA01G35390.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35390.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G886952_T01 (Zea mays), 5'ss of exon 10
GCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGCAAAAACGACAGAATAAGTCTGGCAATGGATGTTGGTGCAGgttttctccttatctc-tctgcagctttcatatagacctatttgagtaatcttttttctactttacattgaaaaatccttaaaacttggaatgcccaaaatgtcttgtag
||||| || ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| || |      || |   | ||||  |  ||| ||||   |     || |  | ||  |      |||  |    |||    |     || |||   | ||||||  | ||  || |                            
GCTCTCCTATTGGTGGCTTTAATGTGTTTCTGGGGTTGCTTTCTTTACAAAAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtggcatgtaatatgttgtgcaagtatttattatttttcaaaggaaattgtct-tatgacattgctagatttttcag---------------------------

upper sequence: GLYMA01G35390.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 10
GCTCTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAAAAGTTTGGCAAAAACGACAGAATAAGTCTGGCAATGGATGTTGGTGCAGgttttctccttatctct---ctgcagctttca---tatagacctatttgagtaatcttttttcta--ctttacattgaaaaatccttaaaacttggaatgccca---aaatgtcttgtag------
|| || ||||||||||||||||||||||| ||||| || |||||||||||||| | ||| ||||| ||  | |  ||||| |||||||||||| ||| ||||  | | || ||  ||   ||  | | | |    |  |    |||| |  |||| ||| || ||  |||  | ||     |||||  ||       ||  | |   | | ||  | ||       
GCACTGCTTTTGGTGGCACTTATGTGCTTTTGGGGCTGCTTTCTTTATAAAAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGgtgctgttctcataactattctataacctactgtctgaatgtttattgggctaatatttattatatccttgtccttttgggatcctagaattcaatcatatctattgacaagttatataacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393318|gb|EV263193.1|EV263193
EST:     CAGAATAAGTCTGGCAATGGATGTTGGTGCAG                         GTGCATCAATTGTGATGTTTCATGGAGACTTACCATATTCTTCAAAAGACA
genomic: CAGAATAAGTCTGGCAATGGATGTTGGTGCAGgttttctcct ... tgtcttgtagGTGCATCAATTGTGATGTTTCATGGAGACTTACCATATTCTTCAAAAGACA