1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGATCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttggaatactcttacctttagtgattattccattaccataagctatagagtatagagacattatatattttattttcattcagtaattcttcatgatgtatgcattcttctttcatcag
species | Glycine max |
transcript | GLYMA01G30400.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGG GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGEST: gi|16344579|gb|BI970174.1|BI970174
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
EST: TTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGG GTCTTCTGGGTACAGCTGCA-TTGCATTNNNNNTGCTTCTACCTTCTCCTTEST: gi|9204679|gb|BE330903.1|BE330903
genomic: TTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATT-TTTCTGCTTCTACCTTCTCCTT
EST: TCTTTCTCCTTTCTTGAATGAATTTTTCATCAACCTGGATGATATCTGGG GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGEST: gi|14991711|gb|BI317384.1|BI317384
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
EST: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGG GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGEST: gi|17022512|gb|BM093546.1|BM093546
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
EST: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGG GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGATCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttggaatactcttacctttagtgattattccattaccataagctatagagtatagagacattatatattttattttcattcagtaattcttcatgatgtatgcattcttctttcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA