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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGGAAAAGCTTCTCTACTAGCTGCACTTGACTACTATGTTGGCTTGCATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtgctagatgctttttggatgactcttatttaagcttaatttgttacggaggttattaaactatttgagaatttttaaataggttactaaact...

Basic information

species Glycine max
transcript GLYMA01G02850.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G057037_T04 (Zea mays), 5'ss of exon 1
AAAGGGAAAAGCTTCTCTACTAGCTGCACTTGACTACTATGTTGGCTTGCATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtgctag-----atgctttttggatgactcttatttaagcttaatttgttacggaggttattaaactatttgagaatttttaaataggttactaaact
  | || || |||||| | ||||| || |||||||| ||| |  || ||||||| ||||| || || ||||| || || ||||||||||||||||| ||||| |||| |  | |     ||  || || ||| | || | || | || ||   | | ||       |||   |   |                            
TGAAGGGAAGGCTTCTGTTCTAGCAGCTCTTGACTATTATATCAGCATGCATAGCGACATTTTCATATCTGCATCTCCTGGAAACATGCACAATGCTTTGgtaagttatcgttgcctctatatttattagatcattcct-ttaacgcgtagcct-tcactagaacaattcttcgcctcag-------------------------

upper sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0313g00030.t01 (Vitis vinifera), 5'ss of exon 9
AAAGGGAAAAGCTTCTCTACTAGCTGCACTTGACTACTATGTTGGCTTGCATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtgctagatgctttttggat-gactcttattta--agcttaatttgttacggaggttattaaactatttgagaatttttaaataggttactaaact--
 |||||||| || ||| |  | |||||| |||| ||||||||| || ||||||||||||| || ||||||||||| || ||||| |||||||||||||||||  ||  | ||   |  |  ||  |   |  |||||| |  |  | || |||   |  | | |  |  |  |||  || ||||   | |     |||   ||  
TAAGGGAAAGGCGTCTTTGTTGGCTGCAGTTGATTACTATGTTAGCATGCATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggt-atcctgactaataattacaccaaaacttattcatcatatcaaattgcggcataagctggtccaa-attgtaggattt---agtgctccactttccttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714065|gb|BW684519.1|BW684519
EST:     ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: gi|8826138|gb|BE209798.1|BE209798
EST:     TTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: TTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: gi|23731182|gb|BU763701.1|BU763701
EST:     ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: gi|192294017|gb|FG987186.1|FG987186
EST:     ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGGATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: gi|209705988|gb|BW664859.1|BW664859
EST:     ATAGTGACATATTTATCTCTGCTCCCCCAGGAAACATGCACAATGCATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
EST: gi|9204804|gb|BE331028.1|BE331028
EST:     ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTG                         GTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA
genomic: ATAGTGACATATTTATCTCTGCTTCCCCAGGAAACATGCACAATGCATTGgtgagttgtg ... atgatgatagGTTGGACACCGGACATACTTGAACTTAAAGACTATAAGGCCAAATATGGCA