1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTACACTGGCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcattgggcatgatatttgttgattccacagaataaagatgatttatttattaatattcaataatcctttctactaacatttcatgatttgttgctttgttaattgttatgcag
species | Glycine max |
transcript | GLYMA01G00870.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTEST: gi|15202568|gb|BI425469.1|BI425469
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTEST: gi|6725492|gb|AW309891.1|AW309891
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTEST: gi|31306909|gb|CD392112.1|CD392112
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: GCTATACAAGTGGACTTGTGAATGGAAGACGAACTTATATACCCTTCTAT AGAATCACTGAGAGACAGAATCACGTAGTGATAACTGATAGAATGTGGGCTEST: gi|7693069|gb|AW761167.1|AW761167
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTACACTGGCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcattgggcatgatatttgttgattccacagaataaagatgatttatttattaatattcaataatcctttctactaacatttcatgatttgttgctttgttaattgttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA