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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttataatgcttccactcactggcttaagggttcaatttttaactatcttcaacagcctaagaataatgagaagtttatatctt...

Basic information

species Glycine max
transcript GLYMA01G00870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc-taaatgcttataatgcttccactcactggcttaagggttcaatttttaactatcttcaacagcctaagaataatgagaagtttatatctt
|| ||||||||||||||||| || |||||||| || ||||| ||||||| |||||  || ||||| |||||| | |||||| | |||||  |  |||| |||||| |||  | |  |   |  |||   | | | ||       |         | | || | | |    || |  |  ||   |  |   | ||| |   
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagaccaatatgtggctagtaacatatgatacttgatgcctgtcaattgtatgtgtcaactaactaactcttgggtatgtatctgc-

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttc--ctaaatgcttataa----tgcttccactcactggcttaagggttcaatttttaactatcttcaacagcctaagaataatgagaagtttatatctt
|| || |||||||||||||| || |||||||| || ||||| || |||| |||||  || ||||| |||||| |||||||| | |||||| |  |||| |||||| |||  | | | ||  ||||    ||||   |  |  |  ||      |  |  | | || ||  || |  | |    || || |     | | ||     
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgagaggcgaataaattatgctaatatacgatatctgtcaaatatatgtgtcaattaa-ttaactaactcttgagtatttctctgctaat-----

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttataatgcttccactca-ctggcttaagggttcaatttttaactatct-tcaacagcctaagaataatgagaagtttatatctt-
|||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |||||||||||||| |||||| |  ||||||||||||||| |   |  ||||  | | |    ||| ||| || |    ||  |   |   ||   | ||||||||      ||  |||||| |  ||      
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttcatg--tctttattgtccatatgttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaa-tgcatggagga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691740|gb|AW759862.1|AW759862
EST:     AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCG                         GATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT
genomic: AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc ... tatgatacagGATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT
EST: gi|192321852|gb|FK013230.1|FK013230
EST:     AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCG                         GATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT
genomic: AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc ... tatgatacagGATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT
EST: gi|10237267|gb|BE806155.1|BE806155
EST:     AGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAAACAG-G                         GATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTG
genomic: AGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAA-CAGCGgtaagtttcc ... tatgatacagGATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTG
EST: gi|6566092|gb|AW233852.1|AW233852
EST:     AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCG                         GATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT
genomic: AAGTGTAGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc ... tatgatacagGATTTATTGCAATGTATGCTACTCTTGCGAGTCGAGACGTGGATTGTTGCT