1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCAGATATTCTTGACCCTGCCCTTATGCGTTCTGGTCGATTAGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtctttaaacttcatctgctgacttgtttttcaaacagaacatttactgactgctctcactttgatatttcag
species | Glycine max |
transcript | GLYMA20G38030.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAG ATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTTEST: gi|7233106|gb|AW568456.1|AW568456
genomic: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtc ... gatatttcagATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTT
EST: AATTGAGTTTCCACACCCAAGTGAAGAAGGCA-GAGCTCGAATTCTACAG ATCCATTCGAGGAAGATGAATGTTEST: gi|192317514|gb|FK008966.1|FK008966
genomic: AATTGAGTTTCCACACCCAAGTGAAGAAG-CAAGAGCTCGAATTCTACAGgtttggtgtc ... gatatttcagATCCATTCGAGGAAGATGAATGTT
EST: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAT ATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGA-GAACTTEST: gi|31460097|gb|CD402125.1|CD402125
genomic: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtc ... gatatttcagATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTT
EST: CCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAG ATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTTEST: gi|209718511|gb|BW662656.1|BW662656
genomic: CCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtc ... gatatttcagATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTT
EST: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAG ATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTT
genomic: AAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtc ... gatatttcagATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGATATTCTTGACCCTGCCCTTATGCGTTCTGGTCGATTAGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtctttaaacttcatctgctgacttgtttttcaaacagaacatttactgactgctctcactttgatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT