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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaaatgtttatgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag

Basic information

species Glycine max
transcript GLYMA20G36530.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaaatgtttatgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
| |||| |||||||| ||||| || || || |||||||| |||||||||||||| || ||| |  | ||||| ||||| ||||||||||| || || |||||| || ||   || |   ||| |       ||||||       |   || | | |         ||||||       |                                                                                                    
GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgttagtatgttctattc--tgcatacagaactgagatgctgccttagttggcctaaatgttgtttcctatatgttacttag--------------------------------------------------------------------------------------------------

upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaaatgtttatgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
||||||| |||| |||||||| || || || || || ||||| |||| |||||| |||||| || | |||||| |||| ||||||||||| ||  | |||||| ||      ||||   |  ||  |  |   |   |||    ||||| ||   |        |  | |  || |    |  |      |    |  ||| |                                                                            
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAAAATCTCATCAAATATGGGAACCATTCGTTGACCTATAGAATAGTTGATAGAATTTTCGCACAGgttagt-----ctactcaat--tttagcatcaaaaccttagccctttattaccaaaatgttgtgctttgtgtccttatattggcccttttact--gcttttag----------------------------------------------------------------------------

upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggattacttgttgcttctgtctttgagatttaaatgttt-atgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
||||||||| |||||||||||| | || |||||||| ||||||||  ||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  || |    |||   |   |   | || ||  ||| ||   |   ||  |       | |   |||  ||   |  |  |   | | ||    | |   | |||    || |  | |                                                   
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaaccttgctctttaatgcctactacttgaagattttatttatattgcttctattttaagagttctttcctcgtt--caaagttattattgctcttaagatgcattggtttcttctcag--------------------------------------------------

upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggatta-cttgttgcttctgtctttgagatttaaatgtttatgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
||||||||| |||||||||||| | || |||||||| |||||||| |||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  | |||  | |||  |  |||    |||| ||   |   | || ||        |||    |     | ||  ||     |  ||   |    |||  |   || || |  | | ||                                                   
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaatctttctacttgaggattttg--tttatattgcttccatttaagagttctgtcctcgttcaaagttattattactcttaagaggactgtcatcatggataatgcattggtttctacttag----------------------------------------------

upper sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttg-tgtggattacttgttgcttctgtctttgagatttaaatgtttatgactt-cagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
| ||||||||||||| |||||||| || |||||||||||||| ||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| | |       |  ||    |  | | ||| | |   || | |||   |||  | ||   |   | |   | |    |||   |||                                                                                            
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagctactccacatctgcatttcttatttttaaaa---aacttttttctactagctgccgaatgtctttgtcactcggtctacttaatag-----------------------------------------------------------------------------------------