1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatcttttagcttttcatgttcggcgaacacatttttatttttattgtgactttcggaatttgccattgtttttcactcag
species | Glycine max |
transcript | GLYMA20G26700.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAG GTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAAEST: gi|207826761|gb|GD800250.1|GD800250
genomic: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAA
EST: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAG GTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAAEST: gi|7691903|gb|AW760021.1|AW760021
genomic: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAA
EST: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAG GTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAA
genomic: GAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatcttttagcttttcatgttcggcgaacacatttttatttttattgtgactttcggaatttgccattgtttttcactcag
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC