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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcag

Basic information

species Glycine max
transcript GLYMA20G25830.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 5
AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcag
|  |||||||| ||| | || |||||||||| |||||| |||||||||||||||||||||  ||| | |||    | ||| | ||  | | ||    |  |||  |||     | ||   | |||  || ||    |  |||||  |                                  
ACCCGTGATGATGCTAGGCAATTTATGAAGTATCTTCACCCTGATCTTGGTGTTGgtaatg-aatttaatttccatatatgatcta-gcagtgcagagttatgtgattggaaaaataaaaacctgatttttaccc-acctttgagcag---------------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 5
AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcag
|  |||||||| ||| | || || ||||||| ||||||||||||||||||||| |||||| || |  |   |||| | || ||  ||    ||| || | ||  |||   ||||| |  ||      |  |||||    |||||  |                                  
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatttag---ctttctaatcaggcttag--tgg-tgtagatttaat-gcttgataa-atactaatttgatatttctactttgagcag---------------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 5
AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcag
|  |||||||| ||| | || || ||||||| ||||||||||||||||||||| |||||| || | | |  |||||  || ||  ||      | || | ||  |||   ||||| |  |       |  ||||||   |||||  |                                  
ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgca-tttaa--cttttggatcagactta---ctgttgtagatttaat-gcttgataa-atgctaatttgatatttgtactttgagcag---------------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 6
AAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTGgtaattcaatctgattctttt---ttattagctttgaat-tggctggaaatggaattaattgattatgtatctgcattgta-------tttgagatttg--aaaacatttttggtaatt-actatgttt----gatcttggcag-------------------------------
|| |||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| || |   | | |       | |   || ||||  |  || || ||||| |   ||| ||   | |||| | || |       |||   |||||   | |||  || | | ||| |||   | |    |||||    ||                               
AAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTGgtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagacagattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacag