Sequence
atgc intronic sequence ATGC exonic sequenceTACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtgagtggtgttagtcttagctgtgcacacctgtattattgttgttagacagaagatttagttcctacttgtatggaaatccttgttgcttgcatatctc...
Basic information
species | Glycine max |
transcript | GLYMA20G25600.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G25600.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G042371_T01 (Zea mays), 5'ss of exon 5
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtg--agtggtgttagtcttagctgtgcacacctgtattattgttgttagacagaagatttagttcctacttgtatggaaatccttgttgcttgcatatctc
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TACTCTATGGCCTGAATCGCACAAACTATATGGTCATGGAAACGAGCTCTTCTCTATATGCTGTGATTATGAAGGGAAGCTTGTTGCTTCATCTTGCAAGgtattggcgctgcatgttttc-ctgtgctaatcgtggaaattgttaatagagcaacaacaatacaaataatcacaagcatcttgtgatctgatggaaacac-
upper sequence: GLYMA20G25600.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 8
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtgagtggtgttagtctt----agctgtgcacacctgtattattgttgttagacagaagatttagttcctacttgtatggaaatccttgttgcttgcatatctc--------------------------
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TACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGgtaagttaatgcagttttcagaatttttttacacttcttcaatc--tcctagatttagattttagatctaactgagcaggattccattactaaattattatttttatatatgaaccacaaacttcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193551627|gb|FK508510.1|FK508510EST: TTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAG GCTCAATCTGCAGCAGTTGCAGAGGTATGGCTTTGGCAGGTGGGTTCATGG
genomic: TTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtgagtggtg ... tgcattgcagGCTCAATCTGCAGCAGTTGCAGAGGTATGGCTTTGGCAGGTGGGTTCATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGgtgagtggtgttagtcttagctgtgcacacctgtattattgttgttagacagaagatttagttcctacttgtatggaaatccttgttgcttgcatatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT