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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcggattgcttatggtgccttttgtcaaatatgtattactagttgactgtgaaatatatgacttgtaaaacagtttaatctctggttgtttagag...

Basic information

species Glycine max
transcript GLYMA20G24070.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 7
---ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcggattgcttatggtgccttttgtcaaatatgtattactagttgact--gtgaaatatatgacttgta-aaacagtttaat--ctctggttgtttagag
    || || || |||||||| || ||||||||||||||||| || || ||||||||||||||| | || ||  |  | ||||||   |  || | |   ||||||  ||  |    || |    | |   |  || | || | || | | ||||   |||| || |  | ||   | | | || |||||  || | |||||  |  |
CCTCTTTTCTGCTGCTGGTCTTCCTCATAATGAAATTGCTGCCCAAATTTGTCGTCAGGCTGGCCTTGTGAAAAGCTTGGAGAAA---GGCAAGCATGCAGAGgta--gccaagcatttctctcacataaagataa-tctg-actatttgatgacccagtgagatttg-ggctcacatatatagcttaataactttagttgtacatgg

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 7
---ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgta--tagcggattgcttatggtgccttttgtcaaatatgtattactagttgactgtgaaatatatgacttgtaaaacagtttaatctctggttgtttagag
   ||| || || ||||| ||||| || |||||||||||||| ||||||||||||||||||||| | || |||  | | ||||||   |  || | |   ||||||  ||  |  |      ||   || |    |          ||| |    | | |  |   ||  |   ||  ||||     ||||    |  |  | | 
CCTATTTTCTGCTGCTGGACTCCCTCACAATGAAATTGCTGCTCAGATCTGTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCAGAGgtagctaatgtgtcctaactgcaaccctaccccctcccctacctacaaacatatttttcagagtacaaacagttgaacacac--atctgcactcttaaaaaa

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
---ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgta--tagcggatt---gcttatgg-tgccttttgtcaaatatgtattactagttgactgtgaaatatatgact---tgta-aaacagtttaatctctggttgtttagag
    || || || ||||| ||||| || |||||||||||||| ||||| ||||||||||||||  | || |||  | | ||||||   |  || | |  |||||||  ||  |  ||    ||| |   |||       |    |||   | |   ||  |    ||| ||||   |   || | |||||||| ||                 
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat----------

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 8
ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcggattgcttat----ggtgccttttgtcaaatatgtattactagttgactgtgaaatatatgacttgtaaaacagtttaatct-ctggttgtttagag
 || || || || ||||| ||||| |||||||||||||| ||||| || ||||||||||| || || |||||  ||||||| || ||||||||||| |||||||  ||  ||    ||    ||| | | |   ||  |    |||  |   | ||  | | |    |||    | | ||||||  |  | |   ||        
CTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGAGgtatcacgatttatacattactggtccgtgtctacagttggaaattggtttgttacaattataacagtgatcccttagacagttagacatacccattaca-----

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 7
ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcggattgcttatggtgccttttgtcaaatatgtattactagttgactgtgaaatatat-gacttgtaaaacagtttaatctctgg----ttgtttagag
 || || || |||||||| || ||||||||||| ||||| ||||| ||||| ||||||||  | || ||| |  | ||||| ||||  | ||| |||||||||| |  || |   |     |   |||| ||    | || ||  | |  | ||  ||| || | || | ||| || |  |    |   |     ||||||    
TTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCTCAGATATGTCGGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtagactcgctgcacagaaatttggca----tttaataaaattgaattgcaaaagatgttgattagtagaataactagggcaaagaaccattgttttat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279439|gb|BI943437.1|BI943437
EST:     GTCAGGCTGGCTTAATCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|23729967|gb|BU763089.1|BU763089
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|16279488|gb|BI943462.1|BI943462
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|193680305|gb|FK624813.1|FK624813
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|151411391|gb|EV281202.1|EV281202
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|19346883|gb|BM891771.1|BM891771
EST:     GATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
EST: gi|16279486|gb|BI943461.1|BI943461
EST:     GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG                         GGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagcgga ... tactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAAC