1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggctgttgatgtgatctgtttctttttttttttgtttagtatatttaattaaaaattgtattttctttttacag
species | Glycine max |
transcript | GLYMA20G22600.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAATEST: gi|22522569|gb|BU081380.1|BU081380
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|120495461|gb|EH223628.1|EH223628
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTANCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|12773850|gb|BG238777.1|BG238777
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|193629894|gb|FK575020.1|FK575020
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTEST: gi|15287684|gb|BI471575.1|BI471575
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGT
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|14990268|gb|BI315941.1|BI315941
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|27426708|gb|CA938228.1|CA938228
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACGTCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTTCTTGGACAG CCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGEST: gi|11413300|gb|BF425311.1|BF425311
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGNTGAGATCATCAAGEST: gi|192296530|gb|FG991636.1|FG991636
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGEST: gi|209699788|gb|BW655801.1|BW655801
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|15000029|gb|BI320843.1|BI320843
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|254333710|gb|GR848628.1|GR848628
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|192321549|gb|FK012899.1|FK012899
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGATGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|14990090|gb|BI315763.1|BI315763
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|11412139|gb|BF424159.1|BF424159
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|120492579|gb|EH220746.1|EH220746
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGEST: gi|22525150|gb|BU083970.1|BU083970
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACGTCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTTCTTGGACAG CCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGEST: gi|13481244|gb|BG510587.1|BG510587
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
EST: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAG CCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
genomic: TTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggct ... ctttttacagCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGgttggtggctgttgatgtgatctgtttctttttttttttgtttagtatatttaattaaaaattgtattttctttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT