Sequence
atgc intronic sequence ATGC exonic sequenceCATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatccttgctttgagattttcaatttattttctgcatttctttttgactcttttcttgattcaatatggagatgttctgtatgattataat...
Basic information
species | Glycine max |
transcript | GLYMA20G11330.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 16
CATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatccttgctttgagattttcaatttatttt--ctgcatttctttttgactcttttcttgattc-aatatggagatgttctgtatgattataat
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TATACCAATTCAATTTCAGCGTTTTTGGCTGTGGGCAAAGCGCCAAAACCACACATATCGTCCTAATCGGCCATTGACACATCTAGAAGAACAACAATCTgtaaatgtt---ttctactttagcacttctagtatgctttggtttcaaatatcttatgttcttaaagttactctgatgctgttgaattatgtggctttgtatt
upper sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 16
CATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatcc--------ttgctttg-agattttcaattt--attttctgcatttctttttgact---------cttttcttgattcaatatggagatgttctgtatgattataat-------------------------------------------------------------------------
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CGTCCCTGTTGAGTGCCAAAGGTTCTGGCTCTGGGCAAAGCGCCAAAACCACACATATCGTCCTAACAGACCACTAACTGATCAAGAAGAGGCCCAAACTgtaattcctgttccgatgagtcctattatgcagaattgcactctcgattgtcttcatgcttttatgaatgcagtttattttttctggttgcagtgcagttttagcccagtaggcagtcgttgctcgtgaagtgagttgtgtagccttttttttttaataatgcttgtgatcttgtctttgtattgacatccag
upper sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 16
CATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatcctt---gctttgagattttcaatttattttctgcatttctttttgactcttttcttgattcaatat-ggagatgttctgtatgattataat
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CGTCCCTGTTGAGTGTCAACGGTTTTGGCTTTGGGCGAAGCGCCAAAACCACACATATCGTCCTAATAGACCACTTACTGAGCAAGAAGAGGCTCAAACGgtagcttctgcttctgtcagcactgggattcataatt-attcttgatggttttcttggtgttgttgttattctctgtgttagcgattttttgtgttcgctt---
upper sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ13603 (Selaginella moellendorffii), 5'ss of exon 14
CATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatccttgctttgagattttcaatttattttctgcatttctttttgactcttttcttgattcaatatggagatgttctgtatgattataat
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AGTTCCCGTTCACTGTCAACGATTCTGGCTGTGGGCTAAGCGGCAAAACCACACCTACCGTCCAAATCGACCATTAACTGAGCAGGAAGAGGCACAAAGTgtatgtttgagcaatttttatagtttggctaatatttcttttatag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12774018|gb|BG238945.1|BG238945EST: ATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCT GTTGGACAATTGAGAGAAGTGTCCAACAAGGTTCACAATGCAGAACTGAAA
genomic: ATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctc ... tgtattgcagGTTGGACAATTGAGAGAAGTGTCCAACAAGGTTCACAATGCAGAACTGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATACCTGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGGCAAAACCATACCTATCGTCCTAATAGACCATTGACACATATTGAAGAAGCACAATCTgtaaattctcatccttgctttgagattttcaatttattttctgcatttctttttgactcttttcttgattcaatatggagatgttctgtatgattataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC