1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGgtaatttcccaagttacagttgtatgcatgacatttttcctttttaatttcctttaactgctcttaaatctgtttttgcatattactaagccactcgttacattttttttttgttttttaacttagtacag
species | Glycine max |
transcript | GLYMA20G07280.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAG GTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTCEST: gi|120529641|gb|EH257775.1|EH257775
genomic: TGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGgtaatttccc ... cttagtacagGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTC
EST: ACGAAGTGTTCAAG GTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTCEST: gi|192326437|gb|FK017709.1|FK017709
genomic: ACGAAGTGTTCAAGgtaatttccc ... cttagtacagGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTC
EST: TGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAG GTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTC
genomic: TGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGgtaatttccc ... cttagtacagGTTGATGAGAAAGGTATGCGCTGGTTTTATACTGGTGATATTGGGCAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGATAAACCAATGCCAAGGGGAGAGATTGTAGTTGGAGGATTTAGTGTGACAGCTGGTTACTTTAAGAATCAAGAAAAAACTAACGAAGTGTTCAAGgtaatttcccaagttacagttgtatgcatgacatttttcctttttaatttcctttaactgctcttaaatctgtttttgcatattactaagccactcgttacattttttttttgttttttaacttagtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA