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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg...

Basic information

species Glycine max
transcript GLYMA19G45140.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctg-atttggctat-tatatgatgattttc--actttagttcatactcagttttactac-agatgttcactgttaagtcaa-gaaagtatctccaagcatg-----
| |||||||||||||||||||| || ||| | ||||||||||| || || ||||||||||||||  | ||||||||||| ||  ||||||| || ||||||| ||    ||    || | ||  |  | || ||   || |  |    |  ||||   ||   | | |||   |  | | ||     ||    || | |  |  |      
GGGGTGATAATGAGGTTCAGCGTACCATGTTGGAAATTGTGAACCAACTCGATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg-
| || || |||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||  | ||||| ||||| |||| || | ||||   |    | |  |  || |||  |   | || |  |  || |              || |    | |||  | ||||   |   |   
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtatttt-atttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagtt-catactcagttttactacagatgttcactgttaagt--caagaaagtatctccaagcatg
| || || |||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||  | |||||||| || |||||   ||  |   |  | ||  ||| ||| ||  | | | |       || | |||  |  | |  |    ||||  |  | || ||     |   |  || 
GTGGGGACAATGAGGTCCAGCGTACCATGCTTGAGATTGTAAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTCTAATGGCAACAAATAGgttagttggct--accttcattggattattgtctgtgttgctgtgctaccactgttagaaatggttgttggggttatttttctagtaatgcaatatgacaat-

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt--------tttctgatttggctattata----tgatgattttcacttt------agttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg------------------------------------------------------------------------------
| |||||||||||||||||  | || ||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||||||||||| || ||||        |  ||||  |   |||  |     | ||| |  ||   ||      ||||  |      | |   |   || |||   |   || |     | || | |  |  |                                                                                 
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt----tttctgatttggctatta-----------tatgatgattttcactt-tagttcatactcagttttactacagatgttcactgtta-agtcaa-gaaagtatctccaagcatg-----------------------------------------------------------------
| |||||||| ||||||||  | || ||||| ||||| || || || || ||||| |||||||| ||||| || || ||||| |||||||||||||||||||    || ||  || |  | |||           |||| || | | |   | |||         ||  |   || | ||||     |  | | |||| |||||||  |  |  |                                                                    
GAGGTGATAACGAGGTTCAAAGAACAATGCTCGAAATAGTCAACCAACTGGATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcctctttcgaatgttagttgcaacgtctatgctgctctgcttctatagcctgagtctaggatatgtagatatgtatggcgcaagaatcaatgaaagtagatatacccgcacctgactgattcttgtgaatctagaaagcttagtcaccttacgaaagcaagtgtggtttgtatag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg
| || || || || || ||  | || ||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || |||||||  |       | | | |  ||     | ||   ||    ||| ||| |   ||||| || |                                     
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtact-------gccgacttcatctaagtctt---ttccaatcaaactta-cattactccaaacag----------------------------------

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg
| || || || || || ||  | || ||||| || ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||||||| || |||||||  |       | | | |  ||     | ||   ||    ||| ||| |   ||||| || |                                     
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtact-------gccgacttcatctaagtctt---ttccaatcaaactta-cattactccaaacag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208083324|gb|GD880936.1|GD880936
EST:     AATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGNTGGC-ACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: -ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|192295887|gb|FG992653.1|FG992653
EST:     GATGGGTTTGATGCTCGTGGAAACATCGAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|254320309|gb|GR831117.1|GR831117
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|254338829|gb|GR847546.1|GR847546
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|254337400|gb|GR849353.1|GR849353
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|254337401|gb|GR849354.1|GR849354
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: gi|192300594|gb|FG988891.1|FG988891
EST:     GGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA