1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATGGATTCATAGGGACAGATTCTCATCGCACTAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaaccatgctattactgcttctgaaaagagttactatgaaaatatttatggtagtagctctaaaaatatttatggtagtagctctaaaaatatt...
species | Glycine max |
transcript | GLYMA19G44970.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|22540093|gb|BU089936.1|BU089936
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|31308720|gb|CD393923.1|CD393923
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|193325835|gb|FK290274.1|FK290274
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: AAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|193525040|gb|FK479719.1|FK479719
genomic: AAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|15287121|gb|BI471012.1|BI471012
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|18734328|gb|BM528119.1|BM528119
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|19271144|gb|BM887400.1|BM887400
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAEST: gi|193581145|gb|FK533580.1|FK533580
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
EST: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAG GTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
genomic: CTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaac ... tcttgcacagGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGATTCATAGGGACAGATTCTCATCGCACTAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGgtattgcaaccatgctattactgcttctgaaaagagttactatgaaaatatttatggtagtagctctaaaaatatttatggtagtagctctaaaaatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG