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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgcacacacgcacacacacatgtttatatgcatgtatgtcctttttttaatcttcaaattttataaatttggtgaatggtattgactgaaata...

Basic information

species Glycine max
transcript GLYMA19G44420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G46420.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgt--gcacacacgcacacacacatgtttatatgcatgtatgtccttttt-----ttaatcttcaaattttataaatttggtgaatggtattgactga--aata----------------------
|| |||| ||| ||||||||||||| ||||| || ||| |||  ||||||||||| ||||| ||||| ||  | || ||| |||||||||||||   |  || | ||| | |   |  |    |  |  | | || |     |||     |  || ||  |  |||| || |||  ||     |  | ||| |  ||||                      
ATTTAGGGGCTTTAGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGAACAAGAGGACATAGgtaaacattagctctcactctccatctaaaaggtgcaatcttataagaatggtttgaacatggatgttatagatttaaaagtttcatgtcctatgatcactaaccaatatcttcgtttctgtatcccgtag

upper sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 8
ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgcacacacgcacacacacatgtttatatgcatgtatgtcctttttttaatcttcaaattttataaatttgg---tgaatggtattgactgaaata
||||||||||| | |||||||| || ||||| || ||| ||   ||||||||||| ||||||||||| ||  |||| ||| |||| |||||||| | || |    |         |   ||| | |      |||    || |  |      ||     || | ||||    | ||||| || |    ||   
ATCTAGGAGCTTTGGGAAACTACCCCGGTTCTCCCTTTCTGGGTTCTGATTCAGACATTTTGCTTGATTCTCCGGAGCAAGAGGATATAGgtaa-tttgaaattgcatctctgtcctattttctttctcacaatgcaaattctccatctgggaagacacatgattttgtatctaaatggaatggttataag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531303|gb|EH259436.1|EH259436
EST:     GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG                         TGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
genomic: GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgc ... tttttttcagTGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
EST: gi|151400669|gb|EV270483.1|EV270483
EST:     GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG                         TGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
genomic: GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgc ... tttttttcagTGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
EST: gi|208288823|gb|GE086628.1|GE086628
EST:     GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG                         TGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
genomic: GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgc ... tttttttcagTGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG
EST: gi|208277120|gb|GE080791.1|GE080791
EST:     GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG                         TGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTNTCCGTCAGACGAGG
genomic: GCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAGgtaagtgtgc ... tttttttcagTGGATGACTTCTTTGCTAATACAGAGCCCCCAGGTTCTCCGTCAGACGAGG