Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttgagatttgacttcagctgtctagggccacagacaacccaaatccctacccctcccctccaaataacatgcactgtcctttcacttatgtttatatgaattatcagagcatttgttgaagatgcagattttgattcacttcaatattatctcag

Basic information

species Glycine max
transcript GLYMA19G43790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43790.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 8
GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttga--gatttgacttcagctgtctagggccacagacaacccaaatccctacccctcccctccaaataacatgcactgtcctttcacttatgtttatatgaattatcagagcatttgttgaagatgcagattttgattcacttcaatattatctcag
| |||| |||||||||||||| ||||| || |||||||| || ||||||||||| || ||| |  | ||||| ||||| ||||||||||| || || |||||| || ||   || | |  |||      ||    |  ||    | ||| | | |  |||      | | |    ||  |                                                                                                                  
GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgttagtatgttctattctg-catacagaactgagatgctgccttagttggcctaaa-tgttgtttcctatatgttacttag-----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA19G43790.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 8
GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttgag-atttgacttcagctgtctagggccacagacaacccaaatccctacccctcccctccaaataacatgcactgtcctttcacttatgtttatatgaattatcagagcatttgttgaagatgcagattttgattcacttcaatattatctcag
||||||| |||| || ||||| ||||| || || || |||||||||| |||||| |||||| || | |||||| |||| ||||||||||| ||  | |||||| || |     | | || |||      |||    ||| |  |    | |   |   | |  | ||  | |    ||   |  || |   |                                                                                                     
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAAAATCTCATCAAATATGGGAACCATTCGTTGACCTATAGAATAGTTGATAGAATTTTCGCACAGgttagtctactcaattttagcatcaaaaccttagccctttattaccaaaatgttgtgctttgtgtccttatattggcccttttactgcttttag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA19G43790.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttgagatttgacttcagctgtctagggccacagacaacccaaatccctacccctcccctccaaataacatgcactgtcctttcacttatgtttatatgaattatcagagcatttgttgaagatgcagattttgattcacttcaatattatctcag
| |||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| |     | | | | ||| ||  || ||| | | |  | |  |   |||  ||       ||  | ||    |    || ||    || |     |                                                                                             
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagc---tact-ccacatc-tgcatttcttatttttaaaaaacttttttctacta------gctgccgaatgtctttgtcactcggtctacttaatag--------------------------------------------------------------------------------------------