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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagttttaaagaacttcagaaatattttgtagagtatgtctttttgagctctatatctattttttcttgtgaaagggttctgatatatctacaagttctgcag

Basic information

species Glycine max
transcript GLYMA19G42900.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagt-tttaaagaacttcagaa--atattttgtagagtatgtctttttgagctctatatctattttttcttgtgaaagggttctgatatatctacaagttctgcag
||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| || || |||||||| ||  |  | |       | ||| |  | | |||| | |   | || ||||    | |   | ||| |  | |  |     | |  ||  |                  
GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtgcctctgctttgatgcagtatcaaaatttgcatatagtttcattttatagtttgattttatctactttgtttgtttgatattggcag-----------------

upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 6
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagttttaaagaacttcagaaatattttgtagagtatgtctttttgagctctatatctattttttcttgtgaaagggttctgat-atatctacaagttctgcag
||| || || || ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||     |   |     |||||  |     | |  | |      ||   |||   | ||| |  | ||||   ||  |  |||| | |||| ||     | |||||
GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctctga-----tcagatgtg----gcaagggaa-----ttcacgcttgttgtct-tactctctt---aactgactctgttcatatatatggcatttgcag

upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaag-ttttaaagaacttcagaaatattttgtagagta----tgtctttttgagctctatat-ctattttttcttgtgaaagggt-tctgatatatctacaagttctgcag--------------------------
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||     ||||||      | ||    |        ||||| || |   |   | | ||||||    |    |   | | | | |   || || |   | | ||                           
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag