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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaataatgcaattattagaaacgggcttatatttttgttgggcatatacttttctggtttatggatgaaaaatatattgatatcaaaatttattgcaatcag

Basic information

species Glycine max
transcript GLYMA19G42790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 6
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaat-aatgcaattattagaaacgggcttatatttttgttgggcatatacttttctggtttatggatgaa-aaatatattgatatcaaaatttattgcaatcag------------------------------
||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| || ||||||| |||| |  ||||           | | || || |    | |  | |||| |    | ||| | |  |||| |  ||  ||||   ||| || |  | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcc-tgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaat-aatgcaattattagaaacgggcttatatttttgttgggcatatacttttctggtttatggatgaa-aaatatattgatatcaaaatttattgcaatcag------------------------------
||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||           | | || || |    | |  | |||| |    | ||| | |  |||| |  ||  ||||   ||| || |  | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcc-tgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 8
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaat-aatgcaattattagaaacgggcttatatttttgttgggcatatacttttctggtttatggatgaa-aaatatattgatatcaaaatttattgcaatcag------------------------------
||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||           | | || || |    | |  | |||| |    | ||| | |  |||| |  ||  ||||   ||| || |  | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcc-tgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaataatgcaa-----ttattagaaacgggcttatatttttgt----tgggcatatacttttctggtttatggatgaaaaatatattgatat-caaaatttattgcaatcag-------------------------------------------------
||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |     ||  |   |   |  || |||| |  |    |  |  | |  |||| |  ||| |   |      ||  ||| | | | ||||||  ||  |||                                                   
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag

upper sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 6
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaataatgcaa-----ttattagaaacgggcttatatttttgt--tgggcatatacttttctggtttatggatgaa-aaatatattgatatcaaaatttattgcaatcag----------------------------------
||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |     ||  |   |   |  || |||| |  |  |   | | |  |||| |    | ||| | |  |||| |  ||  ||||   ||| || |  | ||                                  
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctctcattagttttttattatcatccttttcgtttttttttttttcctttggtttaccaaattttatgtcatcatcctttgtttct-tgagatataaatgttaactttgaaaattccttcatcag