Sequence
atgc intronic sequence ATGC exonic sequenceCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctcttattctgactccttaaattctgttagaggttctctctggacatctactaaaaaagtgaactttcag
Basic information
species | Glycine max |
transcript | GLYMA19G42340.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 8
CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtat-ctcttattctgactccttaaattctgttagaggttct--ctctggacatctactaaaaa-agtgaactttcag
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CTCTGCTGACATATGGAGCGTCGGCTGTACAGTTATTGAAATGGTGACTGGGAAGGCTCCTTGGAGTCAGCAGTATAAAGAGgtaatttgttcgtatttctggtgatattttttcgtgaataattttgcttcttaattacaagtggacatactttcttttcag
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 8
CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctcttattctgactccttaaattctgttagaggttctctctggacatctactaaaaaagtgaactt----tcag--------------------------------------------------------
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CTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAGgtacacactcataaaacattgatttatttgtttttcactccattctgctgatttctaagattacattcgatttaactttagtgtccttgatttcagaagattttgcacatacgacactaatgacaggttacattcag
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32294 (Selaginella moellendorffii), 5'ss of exon 6
CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctcttattctgactccttaaattctgttagaggttctctctggacatc-tactaaaaaagtgaactttcag
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GCAAGCAGACATATGGAGTGTGGGTTGCACTGTCATTGAGATGGCAACAGGCAAGCCGCCGTGGAGTGATCAGTTTCAA---GAGgtatgctctcgtc--atttgtttgaaagagagaactcgtctatctggattttatattag----------------
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ20963 (Selaginella moellendorffii), 5'ss of exon 6
CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctcttattctgactccttaaattctgttagaggttctctctggacatctactaaaaaagtgaactttcag
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GCAAGCAGACATATGGAGTGTGGGTTGCACTGTCATTGAGATGGCAACAGGCAAGCCGCCGTGGAGTGATCAGTTTCAA---GAGgtatgctctcgtcatttgtttcaaa----gagagaactcgtctatctggattttatattag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208162310|gb|GD962201.1|GD962201EST: TTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAG GTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCT
genomic: TTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctctta ... gaactttcagGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGgtatctcttattctgactccttaaattctgttagaggttctctctggacatctactaaaaaagtgaactttcag
- - - - - - - - - - - - - - - - - - GAGATG