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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactttgtcttcgtgtagctagggtctttcattctttctattgtaatgacgtgcacatgatttactaatgatcataacttgacag

Basic information

species Glycine max
transcript GLYMA19G42150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42150.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactttgtc-ttcgtgtagctagggtctttc-attctttctattgt-aatgacgt-gcacatgatttactaatgatcataacttgacag
 || | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||||||  | || |    || | || || |    |||| |||   | | |||| |||  ||| | |  |||   | | || |              
TCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAGgttcccaattagcaactcatttatctcgtacttttccatttcatgtgttgttaatctcgttgtatctgacccaatcattag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425324|gb|CA936844.1|CA936844
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATT
EST: gi|9203355|gb|BE329641.1|BE329641
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|7234639|gb|AW569975.1|AW569975
EST:     TAACAAGCATTATTCGGCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT
EST: gi|151412172|gb|EV281984.1|EV281984
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         -CATCATATCTAAAC
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAAC
EST: gi|14516434|gb|BI095106.1|BI095106
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT