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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGGCCCTTATGATGCGTCTCTAATTCAAGCATGGGAAGATTGGGATCTTGAGCATGGCTCAGAGAATGATCACCCAAAAGAGTTCCCAGATAAACAGgtttcctcttttaactttaacttcattagtgatgaacttacgtatatttctaatttgaattgaatttcacaatgttaacacccaattatatattgctgtg...

Basic information

species Glycine max
transcript GLYMA19G41380.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41380.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 8
TCAGGGCCCTTATGATGCGTCTCTAATTCAAGCATGGGAAGATTGGGATCTTGAGCATGGCTCAGAGAATGATCACCCAAAAGAGTTCCCAGATAAACAGgtttcctcttttaactttaacttcattagtgatgaacttacgtatatttctaatttgaattgaatttcacaatgttaacacccaattatata-ttgctgtg-
 || ||||||||||||||  | || || | |||||||||||||||||||    ||||||| ||||| |||||||| || | ||| || ||||| |||||||||  || || |   |||    | | |  |  || |  | || | | | |       |||   ||   | | ||  |        ||  |||  |||| || 
CCAAGGCCCTTATGATGCAGCCCTGATACGAGCATGGGAAGATTGGGATGAAAAGCATGGTTCAGAAAATGATCATCCTAGAGAATTTCCAGAAAAACAGgttatctgttctttttttgtagttactgtttttgcatatgcgcaaactccattacctaatc--atgcaaaattgccatattttttttccataactgctctga