1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaaccctctcatttcccgcaaggcaagaactcctcttttgattattgaatactgaataaccactaattgtgctgatgtaaag
species | Glycine max |
transcript | GLYMA19G35710.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GAGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|193399186|gb|FK361734.1|FK361734
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGANAAAGATGATAAAATTATTGCTGTEST: gi|193487362|gb|FK451853.1|FK451853
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|254335061|gb|GR844846.1|GR844846
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|9901982|gb|BE610950.1|BE610950
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCT-AGATAEST: gi|7589208|gb|AW704987.1|AW704987
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAG-TA
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|193724545|gb|FK662691.1|FK662691
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTCTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|208040310|gb|GD840312.1|GD840312
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: TGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|193555433|gb|FK514310.1|FK514310
genomic: TGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|22523592|gb|BU082403.1|BU082403
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|207757093|gb|GD730051.1|GD730051
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: TTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAEST: gi|254335060|gb|GR844845.1|GR844845
genomic: TTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCA-Ggtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTA
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|193536962|gb|FK490118.1|FK490118
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGGAGAAAGATGATAAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTEST: gi|151398751|gb|EV268622.1|EV268622
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGG-AGAAAGATGATAAAA-TTATTGCTGTCTGTGCTGATGATCCTGAGT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCCGTGCTGATGATCCTGAGTATEST: gi|298189455|gb|HO037858.1|HO037858
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|193588246|gb|FK544037.1|FK544037
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTCTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|15000402|gb|BI321216.1|BI321216
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|8669991|gb|BE191098.1|BE191098
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAA-TTATTGEST: gi|17964359|gb|BM271095.1|BM271095
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTG
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|120533838|gb|EH261971.1|EH261971
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatgtaaagGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaaccctctcatttcccgcaaggcaagaactcctcttttgattattgaatactgaataaccactaattgtgctgatgtaaag
- - - - - - - - - - - - - - - - - AAGCAA