Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGAGTGCTGGTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgttgtcagaagagggttctggcatgtgttttaaaagaatttccttaaggaataaaataccgtgtttaatttttgactattttgataagagcgc...

Basic information

species Glycine max
transcript GLYMA19G35140.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7232911|gb|AW568263.1|AW568263
EST:     GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: gi|4296151|gb|AI442434.1|AI442434
EST:     GTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: gi|9259181|gb|BE347328.1|BE347328
EST:     GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: gi|8283952|gb|BE021511.1|BE021511
EST:     GTGTAGCAAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: gi|151410949|gb|EV280764.1|EV280764
EST:     GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: gi|21256538|gb|BQ453426.1|BQ453426
EST:     GTGTAGCAAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG                         TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG