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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggaacaactactttgtagattttaagctcttactatcagaaaaagagggggtaaaagtttagaatttttgaacagaatttgaacacaccacttatagcataacaactgtttgtaacatgtcgcacatgcatgcag

Basic information

species Glycine max
transcript GLYMA19G34430.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34430.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G159295_T02 (Zea mays), 5'ss of exon 8
TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggaacaactactttgtagattttaagctcttactatcagaaaaagagggggtaaaagtttagaatttttgaacagaatttgaacacaccacttatagcataacaactgtttgtaacatgtcgcacatgcatgcag
||| |||| || ||||||||||| |||||||||||||| || |||||||  ||  |  | |   |   || | | |     || ||| | |  ||  |              || ||  ||| | || | | ||||      |  ||| | |||   ||                               
TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAGgtaatgttgcgccatataga---tgcatactgc---cttttatttttcgacca--------------ttcag--tttctaaatacattttggtttttcttctt-tcgcaatgcag------------------------------

upper sequence: GLYMA19G34430.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S76_98V6.2 (Physcomitrella patens), 5'ss of exon 9
TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggaacaactactttgtagattttaagctcttactatcagaaaaagagggggtaaaag-tttagaatttttgaacagaatttgaacacaccacttatagcataacaactgtttgtaacatgtcgcacatgcatgcag
 | |||||||| || ||||| ||||| |||||||||||||||||||||     || |  | ||   | ||||| | |  |  |  | |  | ||| |   || ||| | | | |||  |  ||  |       ||||   |                                                  
CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGgtatcagctatg--ccacgtatatgtagctgtccactttatccgttaagagaggaagaggggagagggtttccagcttgcgtttgtcttttgtgtagtttga--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495085|gb|EH223252.1|EH223252
EST:     TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG                         CTTGACAATCACCGAAATCAACTGATTCAG
genomic: TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaatttta ... atgcatgcagCTTGACAATCACCGAAATCAACTGATTCAG
EST: gi|22926930|gb|BU544069.1|BU544069
EST:     TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG                         CTTGACAATCACCGAAATCAACTGATTCAG
genomic: TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaatttta ... atgcatgcagCTTGACAATCACCGAAATCAACTGATTCAG