1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
CTACAAATGCTATCTATTGGACTGTGGTACTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaattgcaagttccatttcttcatatgctggtttgaagtggagtcattaatgttactgatatgttcag
species | Glycine max |
transcript | GLYMA19G32010.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCEST: gi|207710261|gb|GD689727.1|GD689727
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
EST: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCEST: gi|193377526|gb|FK340168.1|FK340168
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
EST: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG GAGTTTGTCGCAAGTCAEST: gi|151395921|gb|EV265798.1|EV265798
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCA
EST: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAAATGCTATCTATTGGACTGTGGTACTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaattgcaagttccatttcttcatatgctggtttgaagtggagtcattaatgttactgatatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA