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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAAGCTCAACCTTCCAATCCTTCCAACCACCACTATTGGATCCTTCCCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgctgagactgctgatctctgccttgttttcattgaccacgtgcctgtcttttactgatcatcaatgctgttctctcttcag

Basic information

species Glycine max
transcript GLYMA19G29180.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283431|gb|BE020992.1|BE020992
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|6071898|gb|AW101285.1|AW101285
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|10236584|gb|BE805472.1|BE805472
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|192328366|gb|FK020077.1|FK020077
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|207772143|gb|GD743548.1|GD743548
EST:     AGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: AGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|207830473|gb|GD802431.1|GD802431
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGGGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16106130|gb|BI893870.1|BI893870
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|6069807|gb|AW099413.1|AW099413
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGT-AAGTCAATTAAGGAGGAAATTCGCACAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16278622|gb|BI942999.1|BI942999
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16277989|gb|BI942668.1|BI942668
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16278722|gb|BI943056.1|BI943056
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16349493|gb|BI975088.1|BI975088
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16278501|gb|BI942937.1|BI942937
EST:     GTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: GTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|15589886|gb|BI674502.1|BI674502
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16277874|gb|BI942608.1|BI942608
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16278558|gb|BI942967.1|BI942967
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|298194309|gb|HO040957.1|HO040957
EST:     GGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATCCGCAAAGT
genomic: GGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16997293|gb|BM086665.1|BM086665
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|15814429|gb|BI786704.1|BI786704
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16348451|gb|BI974046.1|BI974046
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|15288042|gb|BI471933.1|BI471933
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16278888|gb|BI943146.1|BI943146
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
EST: gi|16347739|gb|BI973334.1|BI973334
EST:     CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAA                         GATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT
genomic: CCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgc ... ctctcttcagGATCTCCGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGAAGCTCAACCTTCCAATCCTTCCAACCACCACTATTGGATCCTTCCCTCAGACTGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAACAAgtaagaatgctgagactgctgatctctgccttgttttcattgaccacgtgcctgtcttttactgatcatcaatgctgttctctcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG