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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCCGGAAAAATTGTTCTGACAGGAGCCAAGgtataataatggtcatgggatcttcccatgtgcattttagcatttccggctgattcacttacagtgatggtttcattttggtttctttag

Basic information

species Glycine max
transcript GLYMA19G28780.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28780.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
TGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCCGGAAAAATTGTTCTGACAGGAGCCAAGgtataataatgg-------------------tcatgggatcttcccatgtgcattttagcatt--tccggctgattcacttacagtgatggtttcattttggtttctttag
|||||||||  |||| || ||  | |||||||| ||||| ||||| ||||| ||  ||||||| ||||| || || ||||||||||| || ||||| |||||    | ||                     || |||| |||||||   || ||||||   ||   | || || |    | |  |  ||  ||| || |      ||| ||
TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcc-caacttcag