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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaactattaatttatttaatgaactacatgatttccatatatgctttttatatttaggagtaaaataattgaaaaccaacagaggttgggtctggtgga...

Basic information

species Glycine max
transcript GLYMA19G28770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaactattaatttatttaatgaactacatgatttccatatatgctttttatatttaggagtaaaataattgaaa-accaacagaggttgggtctg-gtgga-
||  ||||||||||||| ||| | ||||||||||| ||||  |||||||||||||| || || || || ||||| |||||||| |||||||   |  |   | | ||   |||  ||||            ||  |   || ||  ||  |    ||  ||| ||  |     |||   |||| ||| | 
ATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGgtaagactcgaa--aatcaa--gactgtatgac-----------ctaatcgaatctaa-agccactcgatcaaaacactgatttgtgttatatctgtgtgaag

upper sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 10
ATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaac-tattaatttatttaatgaacta-catgatttccatatatgctttttatatttaggagtaaaataattgaaaaccaacagaggttgggtctggtgga
|| ||    |||||||| ||||| || || |||||||||| ||||||||| || || || || || || || ||||||||||| |||||| | || |    | | |  |  | || || | |||||  | | |||   |    |    | ||  |   || | |     ||         | |  ||  
ATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCGGGGGGAGTCACTGTCAGTTATTTTGAGTGGGTTCAGgtatcatacttccctctcttctatattagcaagttttcctcaca-gctacatgccatagaaaatagcagtgttaagaggaggcatttcaaccatttattga-

upper sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 8
ATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaactattaatttatttaatgaactacatgatttccatatatgctttttatatttaggagtaaaataattgaaaaccaacagaggttgggtctggtgga
||| |   |||||||||  |  || |  | |||||||| || |||||||||||||| || ||||| |||||||| || ||||| ||||| | |     | | ||| | | |     || |||    || |  ||  ||||                                               
ATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAGgtcagtgaggctctttttcacgcaagctttggtttgagcatgtctttcatatag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990362|gb|BI316035.1|BI316035
EST:     TATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaactatta ... tggcacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG