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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTGACCTGGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataatataaacttaaaatgataagtattgtttgttgatttgaatgattgtttacagatatttgctagtttttttaaaaaaaaataaaaggccaa...

Basic information

species Glycine max
transcript GLYMA19G22730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 8
ATAGTTGACCTGGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataatataaacttaaaatgataagtattgtt-tgttgatttgaatgattgtttacagatatttgctagtttttttaaaaaaaaataaaaggccaa----
|| ||||| || ||||||||||||||||||||  || ||| ||||||  |||||||||||||||       || | | | |   ||| || | | ||  |    |  || |  ||| |    |||| |    |  |  |||   |  ||  | || ||| ||    
ATTGTTGATCTAGCAACATTAACTGGGGCCTGTGTAGTTGCTCTTGGGCCCTCAATTGCAGgtat-----gtacataatcatggtgacaaatttggtggtagaaaactgtaaaattataggaagatttaatttgatgatttgtcagcaatgttaagggctaagatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602543|gb|BQ612874.1|BQ612874
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209699896|gb|BW661166.1|BW661166
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|151398506|gb|EV268377.1|EV268377
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209704258|gb|BW683486.1|BW683486
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|254323479|gb|GR835925.1|GR835925
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|192311508|gb|FK005239.1|FK005239
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209708685|gb|BW678866.1|BW678866
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|16278041|gb|BI942695.1|BI942695
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|214006097|gb|DB986588.1|DB986588
EST:     GCAACATTAAAC-AGGGCCTGCATAATTGGTCTCCTATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GCAACATT-AACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|214010109|gb|DB989481.1|DB989481
EST:     TAACTGGGGCCTGCATAATTGGTCCTCAATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: TAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|213595473|gb|DB962413.1|DB962413
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|22927741|gb|BU544880.1|BU544880
EST:     GGCAACATTAANTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|8282655|gb|BE020216.1|BE020216
EST:     GCAACATTTACTGGAGCCTGCATAATTGGTCTTGGATCCTCAATTTG-AG                         GTGTGTATACACCAAGTGATGACCTGGCA
genomic: GCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATT-GCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCA
EST: gi|192312455|gb|FK004969.1|FK004969
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGCCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|192311498|gb|FK005229.1|FK005229
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|31307828|gb|CD393031.1|CD393031
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|254317061|gb|GR826006.1|GR826006
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|31457789|gb|CD399817.1|CD399817
EST:     CATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: CATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209710547|gb|BW661979.1|BW661979
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209699861|gb|BW661145.1|BW661145
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|31474266|gb|CD416294.1|CD416294
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCCAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|151407204|gb|EV277019.1|EV277019
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|192311499|gb|FK005230.1|FK005230
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209716920|gb|BW682283.1|BW682283
EST:     GGCAACATTAACTGGGGCCTGCGTAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|209724515|gb|BW658374.1|BW658374
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|192311507|gb|FK005238.1|FK005238
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
EST: gi|151397711|gb|EV267584.1|EV267584
EST:     GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAG                         GTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG
genomic: GGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataa ... gttttcaaagGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGTTGACCTGGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGgtaattataatataaacttaaaatgataagtattgtttgttgatttgaatgattgtttacagatatttgctagtttttttaaaaaaaaataaaaggccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa