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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAAGGGCTATTAATCTTGTCTATATTAGACGGGATCTTGTTCAAAGTGGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgtttctaacccctgaatccattgtgcattcatggttaatgtttctagtagattcaaatttatgtactggcaaacgatgttgttaatttttgaaaaccttctctgacatttgatataatgatgcag

Basic information

species Glycine max
transcript GLYMA18G50960.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193618296|gb|FK572490.1|FK572490
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|208030216|gb|GD830242.1|GD830242
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|208096408|gb|GD892129.1|GD892129
EST:     CTTGTTCAACAAGAATATAGAAAAA                         GACAACAAAATTTTGTT
genomic: CTTGTTCAACAAGAATAT-GAAAA-gtaaatatgt ... aatgatgcagGACAACAAAATTTTGTT
EST: gi|208096408|gb|GD892129.1|GD892129
EST:     CTTGTTCAACAAGAATATAGAAAAA                         GACAACAAAATTTTGTT
genomic: CTTGTTCAACAAGAATAT-GAAAA-gtaaatatgt ... aatgatgcagGACAACAAAATTTTGTT
EST: gi|193427519|gb|FK393083.1|FK393083
EST:     GGTGAAGCCTTGTTGAATCGTGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|193602796|gb|FK560249.1|FK560249
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATC
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATC
EST: gi|208295784|gb|GE096079.1|GE096079
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|208167759|gb|GD962625.1|GD962625
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGGTGACGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|208100287|gb|GD898429.1|GD898429
EST:     AA                         GACAACAAAATTTTGTT
genomic: --gtaaatatgt ... aatgatgcagGACAACAAAATTTTGTT
EST: gi|208100287|gb|GD898429.1|GD898429
EST:     AA                         GACAACAAAATTTTGTT
genomic: --gtaaatatgt ... aatgatgcagGACAACAAAATTTTGTT
EST: gi|208100287|gb|GD898429.1|GD898429
EST:     AA                         GACAACAAAATTTTGTT
genomic: --gtaaatatgt ... aatgatgcagGACAACAAAATTTTGTT
EST: gi|193695435|gb|FK631289.1|FK631289
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|193524791|gb|FK482326.1|FK482326
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|193708047|gb|FK641975.1|FK641975
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACA
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACA
EST: gi|7285565|gb|AW598052.1|AW598052
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT
EST: gi|208202730|gb|GD995245.1|GD995245
EST:     GGTGAAGCCTTGTTGAATCATGCCAACCTCGTTCAACAAGAATATGAAAA                         GACAACAAAATTTTGTTTGAGTAAGGCTGACGAACAGGAGAAAACTATCAT
genomic: GGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgt ... aatgatgcagGACAACAAAATTTTGTTTGAGTAAGGCTGAAGAACAGGAGAAAACTATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTAAGGGCTATTAATCTTGTCTATATTAGACGGGATCTTGTTCAAAGTGGTGAAGCCTTGTTGAATCATGCCAACCTTGTTCAACAAGAATATGAAAAgtaaatatgtttctaacccctgaatccattgtgcattcatggttaatgtttctagtagattcaaatttatgtactggcaaacgatgttgttaatttttgaaaaccttctctgacatttgatataatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC