1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggcattttgacatgcacactgtcatgcctcgtctccatgctatttaatataatttattattttgttaattgaaacttttaaagttgtcaaatg...
species | Glycine max |
transcript | GLYMA18G49660.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|120492993|gb|EH221160.1|EH221160
genomic: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ttattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAAAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTC-TCCTGAACATGAGCTTEST: gi|192322238|gb|FK014134.1|FK014134
genomic: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ttattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCA-G GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|192319773|gb|FK013787.1|FK013787
genomic: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ttattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
genomic: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ttattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatcatggcattttgacatgcacactgtcatgcctcgtctccatgctatttaatataatttattattttgttaattgaaacttttaaagttgtcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG