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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggttactcttgctaatttcaagtgttcaatacttacggctaatatccaagctttctattgactctcatcactccaataatggtggctggcaga

Basic information

species Glycine max
transcript GLYMA18G48380.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48380.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0215g00030.t01 (Vitis vinifera), 5'ss of exon 9
-GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggttactcttgctaatttcaagtgttcaatacttacggctaa---tatccaagctttctattgactctcatcactccaataatggtggctggcaga
  | ||  | |||||   ||| || || ||||||||||||||||| ||||| || ||||||||||||||||||||| |||||  |  |  |    | ||       ||  |   ||  ||    |||  |||||| |||||| | |  |   ||   |     | | |||||| 
TATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggttcttgctctttggctgaatatggtgattttggtggtgaaatacatcagagcttt-tattgattatagtttttcttttctgtattgttggcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984729|gb|BE658837.1|BE658837
EST:     GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGA                         TGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA
genomic: GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggtt ... ggctggcagaTGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA
EST: gi|6228207|gb|AW156806.1|AW156806
EST:     GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGA                         TGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA
genomic: GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggtt ... ggctggcagaTGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA
EST: gi|151399584|gb|EV269455.1|EV269455
EST:     GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGA                         TGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA
genomic: GATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggtt ... ggctggcagaTGATTTTGATGATTTCTGCTCCCAAGCTTCCAAGCTTGCAGAAGAATCAAA