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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctatttgtcaatagttaatcaatatgttctttatttgtcagg

Basic information

species Glycine max
transcript GLYMA18G46440.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctatttg-tcaatagtt--aat---caatatgttctttatttgtcagg
 | ||||   ||||||||||| | || || ||||||||| |||| || |||||||| |||||||| || || |||||||| |||||       |  | |  | | ||| ||| |      |  | | | |  | ||||| | |   ||   ||  || |  | |  ||||   |
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgtttattatattttttaacatcattttttttttcagatcaatggctctgattcccaccatttattctccttgtgcag

upper sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 8
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacacc---ccttttccagtttatatttcattgattt---aatgtctatttgt-----caatagttaatcaatat---------gttctttatttgtcagg
 | || |||  ||||||   ||| |||||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||         ||||| |  |    || || | | |||   || |   | |||      ||| ||   |   ||||         ||  |   |||||||| 
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTATAACATACTTTATTTTGAGgtgagttttgattctttttctttagggatctcttcggttttacaagggtcacttgaacaaacaagagaagacagatataatgatattgtcttgactttgtcag-

upper sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G37350.1 (Arabidopsis thaliana), 5'ss of exon 8
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctatttgtcaatag-----------ttaatcaatatgttctttatttgtcagg
 | || |||  ||||||   ||| |||||||| |||||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||       |||  |  |  |    ||| | |||| ||   |   || ||  |            |  |   ||||  |||| | || |   |
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagttttgatttatctctacaagggtcacttatttgatcgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag

upper sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 8
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctattt--gtcaatagttaatcaatatgttctttatttgtcagg
 | ||||| ||||||||||| || |||||||| |||||| |||| || || || |||||||||||||| |||||||||||||||||   ||    |  |    || | |||  | ||| |  |  | ||||   | ||||  || || |   |      |||||| ||| 
ATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAGgtatgcatttatcgttt--ttcacattgaactgactacacatgtattatggacaatcatttataatctttcctcctatttgacag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491923|gb|EH220090.1|EH220090
EST:     CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG                         GTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
genomic: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacacccc ... atttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
EST: gi|208129458|gb|GD930998.1|GD930998
EST:     CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG                         GTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
genomic: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacacccc ... atttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC