Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagccttttaaattcatagacactatattttaatccaaaaaccttcaggcaaataagagaaatgctatcttttcagcgtgccctttctttgtagtgtcaatgtaatgtaatttatttctatttgccagt

Basic information

species Glycine max
transcript GLYMA18G44590.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566569|gb|AW234212.1|AW234212
EST:     AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGT                         GTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG
genomic: AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagcctttt ... atttgccagtGTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG
EST: gi|5760021|gb|AI965384.1|AI965384
EST:     AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGT                         GTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG
genomic: AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagcctttt ... atttgccagtGTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG
EST: gi|207766367|gb|GD736049.1|GD736049
EST:     AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGT                         GTAAAAAATTGA-GATCTGCATGAAGATCAGGTAAAATAACTGAAGATCGA
genomic: AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagcctttt ... atttgccagtGTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATA-CTGAAGATCGA
EST: gi|7284786|gb|AW597211.1|AW597211
EST:     AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGT                         GTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG
genomic: AAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagcctttt ... atttgccagtGTAAAAAATTGAAGATCTGCATGAAGATCAGGTAAAATACTGAAGATCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATGAGGttagccttttaaattcatagacactatattttaatccaaaaaccttcaggcaaataagagaaatgctatcttttcagcgtgccctttctttgtagtgtcaatgtaatgtaatttatttctatttgccagt

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA