Sequence
atgc intronic sequence ATGC exonic sequenceAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga...
Basic information
species | Glycine max |
transcript | GLYMA18G44550.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 6
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga
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GATTACTTCTTGTACATGGACACTGGAATTATCAGCGTATTGCATACATGATCCTCTACAATTTTTACCGAAATGCTGTTTTTGTGCTAATGTTGTTCTGgtacacattctaccccctgc---tcattcttgtatttgtaatttcaattgaagctaacaaaaatattactatgtgattttttcag---------------
upper sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G398288_T01 (Zea mays), 5'ss of exon 5
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgttta-tataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga---
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GATTACTTCTTGTGCATGGGCACTGGAATTATCAGCGGATCGCATACATGATCCTGTACAACTTCTACCGGAATGCTGTCTTCGTTCTAATGCTTTTCTGgtacgt-tcgtcccctatatatacctttatcgttgtttgaacctctggtctttgtagatcccttttt---tgtgtgtgtacttaagcattcaaattttagaatt
upper sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga
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GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
upper sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S38_368V6.1 (Physcomitrella patens), 5'ss of exon 6
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactc---ttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga
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AATTGCTCCTCGTGCATGGTCACTGGAACTATGAGCGTTTGGGCTACATGGTTCTCTACAACTTTTATCGCAATGCTGTTTTTGTAATGATGCTTTTCTGgtaaatttattgcttcttgaatttgcttttatttggttgaatgttgtttttgaatgccaagttcacatccgctatcaactagttttccaagtggactttt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193307884|gb|FK273432.1|FK273432EST: GTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTG GTACATATTATGCACGGCTTTTTCTACAACTTCTGCTTTGACAGATTGGAG
genomic: GTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatgg ... ttgtctttagGTACATATTATGCACGGCTTTTTCTACAACTTCTGCTTTGACAGATTGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcc