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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaagcggctctttttcagttgttataggatatacatgttgtaatccctggactaggaatataatgaatcaatatcattgtctctattattttgt...

Basic information

species Glycine max
transcript GLYMA18G44460.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 8
GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaagcggctcttt-ttcagttgt----tataggatatacatgttgtaatccctggactagga--atataatgaatcaatatcattgtctctattattttgt
 || || |||||||| || || ||||||||||||||||| || ||||| || |||||||| |||  ||| |||||||| |        |  || || || | |    | |  | || | |  | | ||   |      || |  ||| | || || | |    |||| ||| ||       
-GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACAGAGTTCAGAAAAGTCCAGCAATGgtacgtctttattttgttgtttaggtatgcagtgtgtggtagaaacatcggaagttcgaagtaagaattatacagtggataattgcacttgtgtcttttg------

upper sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 9
GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaagcggctctttttcagttgttataggatatacatgttgtaatccctggactaggaatataatgaatcaatatcattgtctctattattttgt
 || || |||||||| || || ||||||||||||||||| || ||||| || |||||||| |||  ||| || |||||||          || ||  ||| ||  || ||  |                                                             
-GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatg-------tctttattttgttatttaagtatgcag------------------------------------------------------------

upper sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaagcggctctttttcagttgttatagga-----tatacatgttgtaatccctggac------taggaatat--------aatgaatcaatatcattgtctctatt-attttgt-----------------
 || ||||||||||| || ||||| |||||||||||||| || || |||||||||||| |||| ||||||||||||||||    |   | ||||     || ||   ||     | | |||| ||   |   ||         |||||||||        ||  |||  | ||  |      |||| |   |||                 
-GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatttgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688015|gb|BG154351.1|BG154351
EST:     CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT                         GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
EST: gi|31467402|gb|CD409430.1|CD409430
EST:     CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT                         GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
EST: gi|9440109|gb|BE440620.1|BE440620
EST:     CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT                         GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG