Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag

Basic information

species Glycine max
transcript GLYMA18G44210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 7
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgta-ttgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag
| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||  | ||  ||||  ||||||| || || |||||||| ||||||||||| ||| |||   |     || |  | ||  |||    | | | ||  | | |||  | ||     ||  |||  ||           
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTACCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacc-tcttctccattttctttaatttcctaaatttcaattttag------

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgta-ttgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag
| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||  | ||  ||||  |||| || || || |||||||| ||||||||||| ||| |||   |     || |  | ||  |||    | | | ||    | |||  | ||     ||  |||| ||           
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTGCCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacc-tcttctgcattttctttaatttcctaaattttaattttag------

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag
| ||||| || ||  | ||||||||| ||||||||||||| |||||||||||||| || ||| | ||  |||||||||| || ||||| || |||||||||||       ||| |  |||| |  |  ||||    |||     ||        ||   ||||   ||  | |               
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgact--tgttctttt--ttttgcattaactaccttttgtgtgatttgtaacatgctaaatctcag------------

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag
| || || |||||  ||||||||||| |||| ||||| || ||||| |||  |||  | |||||||| ||| | ||||| || ||||| ||||||||||||||||      ||    | || |  |  | | |         |||  | |  ||||| |  ||| |     ||  ||  ||  | |||
TTTTCCGGAATTTCTTACTTGCTGAGAGAATAATGCGGTCCGCAAACTGTAATCCAATATCTCACCCTATGCTGCCTCCTACGCATCAACATCATATGTGgtattcaacaagaaccatattcttctgttatgtaaaatgttatgtgtctagattttgact-cagctatccgttgcat--gcttttcag

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag
| || ||||||||  |||| |||||| | || ||||| || | ||||||| | ||  | || || || ||| ||||||| || ||||||||||||||||||||||   ||   ||||   ||   |   ||||    ||  ||||  |  |  | | |        |  | |  || | |   | |||
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtatt---ggacgttatccctagtttgcattttgatgaattgtgtgtctgagctcttt-----acctccgctaatagctgttttccag

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtat-tgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttt-tatccgcactgcag
|||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||| | || ||||| ||||| || || || ||||||||||||||||||||  |  |||  ||  | | ||   ||||||| ||  ||  ||      | |  ||     ||   | ||   |  ||  |  ||  ||
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagata-agtaattttgtt--aagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6916382|gb|AW397912.1|AW397912
EST:     TCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTG                         GGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCATCTTT
genomic: TCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttgg ... cgcactgcagGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCATCTTT