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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagtttttcttaaaatctcctgatttttttctttatattttctgtttgtcttgcctatgatgatcatttgactaagttctacatttctgtcta

Basic information

species Glycine max
transcript GLYMA18G43310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43310.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 8
GGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagttt----ttcttaaaatctcctgatttttttctttatattttctgtttgtcttgcctatgatgatcattt------gactaagttctacatttctgtcta-
 ||||||||||| || |||||||| |||||||||||  |||| ||| |  | ||||| || ||||| ||||| || ||||||||||||| ||    |  ||  ||  |  |  |       ||   ||||  ||  |||          | | | ||||      ||  |||||||  || |   |  | 
-GCAGGGCATGACTTTCCTATAGTTTTTTACCTTGCTCTGGGTGGATCTTTGCTGTCCTACATATACTCTGCTCCGCCTTTAAAGgtagcttcctatctttttaacattttagtcaagccattctaatttcttgactgttggataataaaagctaatttatcactgatcaagttctgaatattattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284537|gb|BE022105.1|BE022105
EST:     CGGTTGGCGGAGCCCTACTGGCTTATATGTATTCTGCACCTCCATTTAA-                         GTTAAAACGAAGTGGATGGATTGGA
genomic: CGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCC-TTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGA
EST: gi|16276277|gb|BI941773.1|BI941773
EST:     GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA                         GTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
genomic: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
EST: gi|16349016|gb|BI974611.1|BI974611
EST:     GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA                         GTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
genomic: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT