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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgctatattcaagctagttttttaaccccttatttatggtttcattgtaatagttaatattttaactaatgttttataaactcattcctcattcgaaaacaaggatcaatttcaaactcatcacaaaagattttactagctaaaaaccattaccttacacgttcaaatttggtgtcaatttttgtgacacag

Basic information

species Glycine max
transcript GLYMA18G42940.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522123|gb|BU080934.1|BU080934
EST:     GGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|192330011|gb|FK020827.1|FK020827
EST:     GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|51335245|gb|CO979111.1|CO979111
EST:     GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|192330012|gb|FK020828.1|FK020828
EST:     TCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: TCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|208206230|gb|GE002063.1|GE002063
EST:     TACTGGAAACGTGGACGTTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: TACTGGAAACGTGGACG-TTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|6964045|gb|AW432738.1|AW432738
EST:     GACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: gi|10253189|gb|BE820955.1|BE820955
EST:     GGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG                         GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT