1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ACAGTGTTGAATTCAGACATGAAACCTCTCAGCCAACTGCTGGTATTATTTCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAGtatggaacagattatgctattttagggtttctatattctagttttgaaaatatatgcttttttttcatggtatttttcccaaccttgtctcaga
species | Glycine max |
transcript | GLYMA18G42790.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAA ACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCGEST: gi|16349354|gb|BI974949.1|BI974949
genomic: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAGtatggaacag ... ttgtctcagaACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCG
EST: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAA ACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCGEST: gi|298196241|gb|HO044632.1|HO044632
genomic: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAGtatggaacag ... ttgtctcagaACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCG
EST: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAA ACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCG
genomic: TCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAGtatggaacag ... ttgtctcagaACCTGGTTTGCTTGGACCTCCTGTCAAGCATGACGGCAACTCTGTTGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTGTTGAATTCAGACATGAAACCTCTCAGCCAACTGCTGGTATTATTTCAAATGTCACTGGCCCTGCATCTTCAAGAACATTGATTCCTTCTCAGAGtatggaacagattatgctattttagggtttctatattctagttttgaaaatatatgcttttttttcatggtatttttcccaaccttgtctcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC