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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtgtggaccttttctcattttgtcatataatcaagttttggcaataatgtcatttcatcatgttcttaaacatttgtcatacag

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 7
CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtgtg-gaccttttct-cattttgtcatataatca-agttttg--gcaataatgtcatttcatcat--gttcttaaa-catttgtcatacag------------------------------------------------------------------------
| || ||||| || ||||||||||||||||||||||| ||||  |||||||||   | |||     | ||||||||   ||| |||| || ||  | ||  |||    |  ||    |  |   |||   |  |||||  ||  |  |    |   ||| ||    ||||  | ||  ||                                                                        
CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACgtatgtaatctcctctgtgctcagttgcctttttgcagtacagatgcaatggtgctaaattgctactggttgttgcctcattcattatgtagagaatattttgaaatgagcaattatattccctgtctaacagcatgcttatactttcccttttcctctatcag

upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 8
CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtgtggaccttttctcattttgtcatataatcaagttttggcaataatgtcatttcatcatgttcttaaacatttgtcatacag----
| || |   |||| ||||||||||| ||||||||||||||||  |||||||| ||||  ||    |||||||||||  | | | | |||| ||  |  |||||    |  ||| |||      | |    || |||      |    |  || ||   | |||    |   |    
CAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAGgtttgacctatttctttaatattca-atagcagtatgtgaaaaaaaattgtgcatagctaacttattttcctttttctctcttgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337383|gb|BI498039.1|BI498039
EST:     CTCCCATGAAATGCGATTAAGACTAAG                         CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
genomic: CTCCCATGAAATGCGATTAAGACTAAGgtgtggacct ... tgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
EST: gi|7924596|gb|AW830622.1|AW830622
EST:     GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG                         CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtgtggacct ... tgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT