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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTACGACCAGTCACATATTTAAGTGGCTCACAAGGCTCTGAAACTGATGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctctagatcccactcttcaaattttgtttccgtagtcattgttatattaagtcccttgacttttatagtctgtgctctgtgtttatgtgtgtg...

Basic information

species Glycine max
transcript GLYMA18G28130.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G28130.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g05600.t01 (Vitis vinifera), 5'ss of exon 8
AAGCTACGACCAGTCACATATTTAAGTGGCTCACAAGGCTCTGAAACTGATGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctctagatccc--actcttcaaattttgtttccgta--gtcattg-ttatattaagtcccttgacttttatagtctgtgctctgtgtttatgtgtgtg
||||| ||||| || |||||||||||||| || ||||| |||||  ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||   | || |   |  |  | |   | |   | | |  | ||  || || | || |||||    |    |   | | |   | | |  | || | | |      
AAGCTTCGACCTGTTACATATTTAAGTGGTTCGCAAGGATCTGATTCTGATATTCCACATGGATATATATGGAGTCCTCATCTTGTTCCTAAGCCAAAAGgttattgctttgtttttctgattaaaccagaatagatgtcttaaggttatagcttgtattatcctctcctagcataaaaagatttccattatgct-aagca----

upper sequence: GLYMA18G28130.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S159_62V6.1 (Physcomitrella patens), 5'ss of exon 9
AAGCTACGACCAGTCACATATTTAAGTGGCTCACAAGGCTCTGAAACTGATGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctctagatcccactct---tcaaattttgtttccgtagtcattgttatattaagtcccttgacttttatagtctgtgctctgtgtttatgtgtgtg--------------------------------------------------------------------------------------
|||||||||||  | || ||| | ||||| || ||||| |||    | ||  | ||    |  ||||||||||||||||||||||||||||||||   ||||  |  || | || | |  | |   |      |  |||   |  |||  | |   ||   |   | || ||  | ||| | | || |||    ||||   ||                                                                                      
AAGCTACGACCCATTACGTATCTGAGTGGTTCGCAAGGTTCTATCTCCGACTTGCCTACAGGTTATATATGGAGTCCTCATCTTGTTCCTAAACCGTCAGgtacgaactattgacctctttttgatttgttcctaatttttttgatcaccggttatttttatttgtcga-ttgcagagtttttact-tgttaaaatgtagctgcaactaggtgtcaggctttgttgattttgctgccaattccgtattgaaattatgaagatacttacaaggatatgccacttttccag

upper sequence: GLYMA18G28130.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S110_116V6.1 (Physcomitrella patens), 5'ss of exon 10
AAGCTACGACCAGTCACATATTTAAGTGGCTCACAAGGCTCTGAAACTGATGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgt--gggttctctagatcc-cactcttcaaattt---tgtttccg-tagtcattgttatattaagtcccttg--acttttatagtctgtgctctgtgtttatgtgtgtg--------------------------------------------------------------------------
|||||||||||  |||| || || ||||| || || |||||     | ||  | ||    | |||||| |||||||||||||||||||||||||| ||||||  |   | |  |  ||| |||     |  ||    |||||  |  | |  ||       || ||   |||  | || |  |          |  | ||||   || |                                                                          
AAGCTACGACCCATCACCTACTTGAGTGGTTCTCAGGGCTCCATCGCCGACTTGCCTACAGGATATATTTGGAGTCCTCATCTTGTTCCTAAACCGAAAGgttcgaactattcacctcctcacctgatacgttcaaatgtttttgacaattgttacgccgatatgttgattgcaaattgtgcacatcagataatccgattattcttgcgtctgattttattagtttgtgacaattgagtgctgaaattatcaggattcttacgaggacgtctcacttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15288220|gb|BI472111.1|BI472111
EST:     TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAG                         ATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT
genomic: TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctc ... tgctttgcagATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT
EST: gi|9204101|gb|BE330325.1|BE330325
EST:     TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAG                         ATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT
genomic: TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctc ... tgctttgcagATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT
EST: gi|22525050|gb|BU083861.1|BU083861
EST:     TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAG                         ATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT
genomic: TGTTCCACATGCATATATATGGAGTCCTCATCTTGTTCCTAAACCAAAAGgtgggttctc ... tgctttgcagATTGGGGACCAAAAATTGATGTAGTAGGGTTTTGCTTTCTTGATCTTGCGT