Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcag

Basic information

species Glycine max
transcript GLYMA18G27710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcag
||||| || || |||||||||||    ||||||||||||||||||||||| || |||||| | ||||| || ||||  ||||| || || |||||             |||||  ||   ||| |  |  || ||| ||||  | ||| |   |  |  |  |   |||  |||  | |||   |||| |  |    |||     |   |    
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgt------------cattttcctccccgttctagt--ttatagatacacat-attaagcatggcgagcaataatttgttgtt-ttttgca-ttttagccaaaaaaaagagaagggtt----

upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcag
||||| ||||| || |||||||| || || |||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||||| | || ||     ||||  | || |  |   | ||||||| | |||  |   |  | |||    | |   |||  | | || || |        |  | | |                
ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcca-----ttttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa----------------

upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 7
ACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgcaggatatttttatcatggttgtgatgcttttagctacatttcattgatattttcatgtcacccttttatgtcatcttgtggtttttgtgatgtgaaaatcttgaaatgcag
|| || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||||| | || ||     ||||  | || |  |   | ||||||| | |||  |   |  | |||    | |   |||  | | || || |        |  | | |                
ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGgtaactttcca-----ttttgcttatagcaggagttcttttagttccatccctgagcaaatttttacttagtttttactataatattttcacacaacttgtttaa----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208277881|gb|GE074888.1|GE074888
EST:     CAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAG                         ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: CAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAGgtatcattgc ... tgaaatgcagATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT
EST: gi|105631869|gb|DW246218.1|DW246218
EST:     ACGGGATACATTGACTATGACCAG                         ATGGAGAAATCAGCAACACTCTCCAGGCCAAAATTAATTGTTGCTGGAGCT
genomic: ACGGGATACATTGACTATGACCAGgtatcattgc ... tgaaatgcagATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCT