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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgca-atttatggacctttt-caattatctcac---tgagaact----ccaaacttttgattttgtcataaaagttaagcca---------tcttgataattgctactatgcaga----------------------------------
 || ||||| || || || |||||||||||||| ||||||||||| ||||| || |||||| || | || |||||||||||||||||| | |||| |||||||||      |   ||  |  || | || |  | ||     | |||||      |   ||||||||  | |||||| | | ||   |         | || |  |||  |   |   | |                                  
TGCGATTGACTTAATCGTTCAGCATATTCGCACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacctgatgtaaccataaatgttctgcagtcttttcttatataagaacaattgtctgtcttttgatagtctcataatattgaatgtaatatgcactttttcaggatttttgtaacatatataaatattgacattgcaatgctgctttctttcag

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgca-atttatggacct-tttcaattatctcactgagaactc-caaacttttgattttgtcataaaagttaa-gccatcttgataattgcta---ctatgcaga---------------------------------------
 || ||||| || || || ||||||||||| || ||||||||||| ||||| || |||||| || | || |||||||||||||||||| | |||| ||||||||           ||  |  |  | || || | ||    | |||        |||||||  | |||||| | | || |  |     || ||| ||     | || ||                                        
TGCAATTGACTTAATAGTTCAGCATATTCGTACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcag

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga------
 || |||||| | ||||| || |||||||| || || ||||| |||||||| || || |||||| | || ||||||||||| |||||| | |||| |||||||||    ||| ||   || ||     |||| |  |||| || |      ||    |||  |  |||| |   | |  |   |  | ||| | | ||  ||       
GGCAATTGATCTAATTGTTCAACATATTCGGACTAAACTTGGACAGCATGATCTTTGCAAAATACACCCCAATTTGTATGTAATTCAGACTACTTATCAGgtacct---aatgta-aaacattcatttttatttttctgaaaattt---gtttgctgtttgattgtaaacggagaactgtagaggca-ttgatgc-atagaggcatcat

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 7
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccc--tgca---atttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga
 || |||||  | || || ||||||||||| || || ||||| || ||||| ||  |||||||| | |||||| ||||||| |||||| | |||| |||||||||   || |   ||| ||     ||||  ||  |    ||      |  |      ||   ||   ||  |    |  | |  |||  |  || |          
GGCAATTGACCTAATCGTTCAGCATATTCGGACTAAACTTGGACAACATGATCTTCGTAAAATACACCCTAATCTGTATGTAATTCAGACTACTTATCAGgtacctaatgtaaacattcatttttgttttttatagttctgcttgctgtttgatgtccctgtagtttgtatgtactccattctaaattgtaagctgtttt--------

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga
 || |||||||||||||| || || || |  || ||||| ||||| ||||| || |||||||| ||||| ||| | ||||| ||||| ||||||||||||||        | ||||   |||||||  |  |||     | |||    |  || |  ||| ||||   ||   |  |        |    ||| || ||||| 
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgtttt-----acttattccccttttc--tcgtctactcaacaacaatcattttcttgtttagtcacccaaa--agactgatcctttggccgctgct-tgcag-

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaa-ctccaaacttttgattttg-tcataaaagttaagccatcttgataattgctactatgcaga
 || ||||| || ||||| || |||||| |||| ||||| ||||| ||||| || |||||||||||||||||| | || || || || || || |||||||||       || |||  | ||  || |  ||   | | | |  |||  ||||    |    | ||   ||| || |    |||||                   
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaat---tgatatatcaatctcatctac-atacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcag----------------

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaac-------tccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga------------------------------------------------------------------------------------------
 ||||||||||||||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||||| | ||||||||||| |||||||||||||||         ||         |   ||||| | |||| |           |      | ||  | |||  | ||| |  |    || || | ||||  | | |   |                                                                                           
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattat-ttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatg-tcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ31180 (Selaginella moellendorffii), 5'ss of exon 7
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga
 ||||||||| ||||||| |||||||| | ||| || ||||| ||||||||||||   || || ||  ||||  | ||||| || || || ||||  ||||||          ||||  ||||| |         |||| |   |  ||||||||   |   |      | |  |  ||  |||||    |  || |      
TGCCATTGATCTGATTGTCCAGCATATCCACACTAAACTTGGGCAGCATGACCTGACGAAGATTTACTCTAACGTCTATGTGATCCAATCTACTTACCAGgtag---------tatgatcctttacg------ctactgcggcgttgaaactttttcctagattcgtggaatgca--cactttgat--ccgtgaccag-----

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ17251 (Selaginella moellendorffii), 5'ss of exon 6
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga
 ||||||||| ||||||| |||||||| | ||| || ||||| ||||||||||||   || || ||  ||||  | ||||| || || || ||||  ||||||          ||||  ||||| |         |||| |   |  ||||||||   |                                            
TGCCATTGATCTGATTGTCCAGCATATCCACACTAAACTTGGGCAGCATGACCTGACGAAGATTTACTCTAACGTCTATGTGATCCAATCTACTTACCAGgtag---------tatgatcctttacg------ctactgcggcgttgaaactttttcctag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232146|gb|BE801034.1|BE801034
EST:     CCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGA                         TACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATT
genomic: CCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaa ... actatgcagaTACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATT
EST: gi|14125241|gb|BG789679.1|BG789679
EST:     CCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGA                         TACGGGGTGTGCATACCCTGATACGTCATGCCAAGACAACAAAGCATGATT
genomic: CCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaa ... actatgcagaTACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATT
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     TAATTTGTATGTCATTCAGTCAACTTTTCAGA                         TACGGGGTATGCATACCCTGATACGTGATGCCAAGAC-ACAAAAGCATGAT
genomic: TAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaa ... actatgcagaTACGGGGTATGCATACCCTGATACGTGATGCCAAGACAAC-AAAGCATGAT